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| Eukarya | ||
| Eukarya | References |
| Life | Time |
| Abbreviated Dendrogram
Life
├─Eubacteria
└─┬─Archaea
└─Eukarya
├─Metamonada
└─┬─Discicristata
└─┬─Rhizaria
└─┬─┬─┬─Alveolata
│ │ └─Chromista
│ └─Plantae
└─Stem Metazoa
├─Fungi
└─Metazoa
|
Contents
|
Amoils, S (2006), Bacterial physiology: The Mtb proteasome: an open and shut case. Nature Rev. Biochem. 4:325 (research summary). Eukarya.
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Angert, ER (2005), Alternatives to binary fission in bacteria. Nature Rev. Microbiol. 3: 214-224. Eukarya.
Armstrong, PB, MT Armstrong, RL Pardy, A Child & N Wainwright (2002), Immunohistochemical demonstration of a lipopolysaccharide in the cell wall of a eukaryote, the green alga, Chlorella. Biol. Bul. 203: 203-204. Eukarya.
Aspinall-O’Dea, M, M Wentworth, A Pascal, B Robert, A Ruban & P Horton (2002) In vitro reconstitution of the activated zeaxanthin state associated with energy dissipation in plants. Proc. Nat. Acad. Sci. (USA) 99: 16331-16335.
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Baroli, I, AD Do, T Yamane & KK Niyogi (2003), Absence of a functional xanthophyll cycle protects Chlamydomonas reinhardtii from photooxidative stress. Plant Cell 15: 992–1008.
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Brugerolle, G (1991), Flagellar and cytoskeletal systems in amitochondriate flagellates: Archamoeba, Metamonada and Parabasala. Protoplasma 164: 70–90. Oxymonadida, Polymastigidae, Pyrsonymphidae.
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Burgoyne, RD & A Morgan (2003), Secretory granule exocytosis. Physiol. Rev. 83: 581–632.
Butler, MK J Wang, RI Webb & JA Fuerst 2002), Molecular and ultrastructural confirmation of classification of ATCC 35122 as a strain of Pirellula staleyi. Int. J. Syst. Evol. Microbiol. 52: 1663-1667. Eukarya.
Cabello, P, MD Roldán & C Moreno-Vivián (2004), Nitrate reduction and the nitrogen cycle in Archaea. Microbiology 150: 3527-3546. Eukarya.
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Canning, EU, A Curry, & RM Overstreet (2002), Ultrastructure of Tuzetia weidneri sp. n. (Microsporidia: Tuzetiidae) in Skeletal Muscle of Litopenaeus setiferus and Farfantepenaeus aztecus (Crustacea: Decapoda) and New Data on Perezia nelsoni (Microsporidia: Pereziidae) in L. setiferus. Acta Protozool. 41:63-77. Microsporidia.
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Cavalier-Smith, T (1998), A revised six-kingdom system of life, Biol. Rev. Camb. Philos. Soc. 73: 203–266. Oxymonadida, Rhizaria.
Cavalier-Smith, T (1999), Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46: 347–366. Oxymonadida.
Cavalier-Smith, T (2002
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Cavalier-Smith, T (2003), Protist phylogeny and the high-level classification of Protozoa. Eur. J. Protistol. 39: 338-348. Rhizaria.
Cavalier-Smith, T (2004), Only six kingdoms of life. Proc. R. Soc. Lond B 271: 1251-1262. Eukarya.
Cavalier-Smith, T (2006), Rooting the tree of life by transition analyses. Biol. Direct 2006: 1: 19. Eukarya.
Cavalier-Smith, T & EE-Y Chao (1995), The opalozoan Apusomonas is related to the common ancestor of animals, fungi and choanoflagellates. Proc. Roy. Soc. Lond., B 261: 1-6. Apusomonadida.
Cavalier-Smith, T & EE-Y Chao (2003), Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution. J. Mol. Evol. 56: 540-63. Apusomonadida, Rhizaria.
Chillarón, J, R Roca, A Valencia, A Zorzano & M Palacín (2001), Heteromeric amino acid transporters: biochemistry, genetics, and physiology. Am. J. Physiol. Renal Physiol. 281: F995-F1018. Eukarya.
Chistoserdova, L, C Jenkins, MG Kalyuzhnaya, CJ Marx, A Lapidus, JA Vorholt, JT Staley, & ME Lidstrom (2004), The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Mol. Biol. Evol. 21: 1234-1241. Eukarya.
Cho, J-C, KL Vergin, RM Morris & SJ Giovannoni 2004), Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae. Env. Microbiol. 6: 611-621. Eukarya.
Cleveland, LR (1956), Brief account of the sexual cycles of the flagellates of Cryptocercus. J. Protozool. 3: 161–180. Oxymonadidae, Saccinobaculidae.
Clowes, CD (1985), Stoveracysta, a new gonyaulacacean dinoflagellate genus from the upper Eocene and lower Oligocene of New Zealand. Palynology 9: 27-36. Dinoflagellata
Couvreur B, R Wattiez, A Bollen, P Falmagne, D Le Ray & J-C Dujardin (2002), Eubacterial HslV and HslU subunits homologs in primordial eukaryotes. Mol. Biol. Evol. 19: 2110–2117. Eukarya.
Čuboňová, L, K Sandman, SJ Hallam, EF DeLong, & JN Reeve (2005), Histones in Crenarchaea. J. Bacteriol. 187: 5482–5485. Eukarya.
Dacks, JB & AJ Roger (1999), The first sexual lineage and the relevance of facultative sex. J. Mol. Evol. 48: 779-783. Oxymonadida.
Dacks, JB, JD Silberman, AGB Simpson, S Moriya, T Kudo, M Ohkuma, & R Redfield (2001), Oxymonads are closely related to the excavate taxon Trimastix. Mol. Biol. Evol. 18: 1034–1044. Oxymonadida, Pyrsonymphidae.
Daiyasu, H, T Hiroike, Y Koga & H Toh (2002), Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng. 15: 987-995. Eukarya.
Dale, B (1996), Dinoflagellate cyst ecology: modelling and geological applications, in J Jansonius & DC McGregor [eds.], Palynology: Principles and Applications. Am. Assoc. Stratigr. Palynol. Found., 3: 1249–1275. Dinoflagellata.
Daubin, V, M Gouy & G Perrière 2001), Bacterial molecular phylogeny using supertree approach. Genome Inf. 12: 155-164. Eukarya.
Delbac, F, I Peuvel, G Metenier, E Peyretaillade, & CP Vivares (2001), Microsporidian invasion apparatus: Identification of a novel polar tube protein and evidence for clustering of ptp1 and ptp2 genes in three Encephalitozoon species. Infect. Immun. 69: 1016–1024. Microsporidia.
Devos D, S Dokudovskaya, F Alber, R Williams, BT Chait, A Sali & MP Rout (2004), Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol. 2: e380. Eukarya.
Didier, ES (1998), Microsporidosis. Clin. Infect. Dis. 27: 1-8. Microsporidia.
Dienes, L & S Bullivant (1968), Morphology and reproductive processes of the L forms of bacteria II. Comparative study of L forms and Mycoplasma with the electron microscope. J. Bacteriol. 95: 672-687. Eukarya.
Du, Y, S Ferro-Novick & P Novick (2004), Dynamics and inheritance of the endoplasmic reticulum, J. Cell Sci. 117: 2871-2878. Eukarya.
Edgcomb, VP, AJ Roger, AGB Simpson, DT Kysela, & ML Sogin (2001), Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies. Mol. Biol. Evol. 18: 514–522. Microsporidia.
Erxleben, C & H Plattner (1994), Ca2+ release from subplasmalemmal stores as a primary event during exocytosis in Paramecium cells. J. Cell Biol. 127: 935-945.
Evitt, WR (1985), Sporopollenin Dinoflagellate Cysts -- Their Morphology and Interpretation. Amer. Assoc. Strat. Palynologists Found. 333 pp. Dinoflagellata.
Fast, NM & PJ Keeling (2001), Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: Mitochondrion-derived carbon metabolism in Microsporidia. Mol. & Biochem. Parasitol. 117: 201-209. Microsporidia.
Fast, NM, JM Logsdon, Jr., & WF Doolittle (1999), Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: Evidence for a Microsporidia–Fungi relationship and spliceosomal intron loss. Mol. Biol. Evol. 16: 1415-1419. Microsporidia.
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Fensome, RA, JB Riding & FJR Taylor (1996), Dinoflagellates in J Jansonius & DC McGregor [eds.], Palynology: Principles and Applications. Am. Assoc. Stratigr. Palynol. Found., 1: 107-169. Dinozoa.
Fieseler, L, M Horn, M Wagner & U Hentschel 2004), Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Appl. Environ. Microbiol. 70: 3724–3732 Eukarya.
Finlay, BJ, GF Esteban & T Fenchel (2004), Protist diversity is different? Protist 155: 15-22. Rhizaria.
Forterre, P (2006), Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain. Proc. Nat. Acad. Sci. (USA) 103: 3669-3674. Eukarya.
Froissard, M, R Kissmehl, J-C Dedieu, T Gulik-Krzywicki, H Plattner, & J Cohen (2002), N-ethylmaleimide-sensitive factor is required to organize functional exocytotic microdomains in Paramecium. Genetics 161: 643-650.
Fuerst, JA (1995), The Planctomycetes: emerging models for microbial ecology, evolution and cell biology. Microbiology 141: 1493-1506. Eukarya.
Fuerst, JA (2004), Planctomycetes – a phylum of emerging interest for microbial evolution and ecology. WFCC Newsltr. 38: 1-11. Eukarya.
Fuerst, JA (2005), Intracellular compartmentation in Planctomycetes. Ann. Rev. Microbiol. 59: 299-328. Eukarya.
Gade, D, D Theiss, H Lehrach, R Amann, J Gobom & R Rabus (2003), Reconstuction of carbohydrate catabolism in Rhodopirellula baltica by proteomics. Proteomic Forum '03 unpubl. abstr.) P-198. Eukarya.
Garrow, AG, A Agnew & DR Westhead (2005), TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Informatics 6: 56. Eukarya.
Gille, C, A Goede, C Schlöetelburg, R Preiβner, PM Kloetzel, UB Göbel & C Frömmel (2003), A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome. J. Mol. Biol. 326: 1437-1448. Eukarya.
Gitai, Z, N Dye & L Shapiro (2004), An actin-like gene can determine cell polarity in bacteria. Proc. Nat. Acad. Sci. (USA) 101: 8643–8648. Eukarya.
Glickman, MH & A Ciechanover (2002), The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction. Phyiol. Rev. 82: 373-428. Eukarya.
Glöckner, FO, M Kube, M Bauer, H Teeling, T Lombardot, W Ludwig, D Gade, A Beck, K Borzym, K Heitmann, R Rabus, H Schlesner, R Amann & R Reinhardt (2003), Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Nat. Acad. Sci. (USA) 100: 8298-8303. Eukarya.
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Javaux, EJ, AH Knoll & MR Walter (2004), Eukaryotic diversity in mid-Proterozoic oceans: TEM evidence for eukaryotic diversity in mid-Proterozoic oceans. Geobiology 2: 121-132. Plantae.
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Jenkins, C, V Kedar & JA Fuerst (2002), Gene discovery within the planctomycete division of the domain Bacteria using sequence tags from genomic DNA libraries. Genome Biol. 3: research0031. Eukarya.
Jenkins, C, R Samudrala, I Anderson, BP Hedlund, G Petroni, N Michailova, N Pinel, R Overbeek, G Rosati, & JT Staley (2002), Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter. Proc. Nat. Acad. Sci. (USA) 99: 17049-17054. Eukarya.
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Keeling, PJ & NM Fast (2002), Microsporidia: Biology and evolution of highly reduced intracellular parasites. Ann. Rev. Microbiol. 56: 93–116. Microsporidia.
Keeling, PJ & BS Leander (2003), Characterization of a non-canonical genetic code in the oxymonad flagellate Streblomastix strix Eukaryota, Oxymonadida). J. Mol. Biol. 326:1337-1349. Streblomastigidae.
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