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Eukarya |
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Anderson, DM, JJ Lively, EM Reardon, & CA Price (1985), Sinking characteristics of dinoflagellate cysts. Limnol. Oceanogr. 30: 1000. Dinoflagellata.
Angert, ER (2005), Alternatives to binary fission in bacteria. Nature Rev. Microbiol. 3: 214-224. Eukarya.
Armstrong, PB, MT Armstrong, RL Pardy, A Child & N Wainwright (2002), Immunohistochemical demonstration of a lipopolysaccharide in the cell wall of a eukaryote, the green alga, Chlorella. Biol. Bul. 203: 203-204. Eukarya.
Aspinall-O’Dea, M, M Wentworth, A Pascal, B Robert, A Ruban & P Horton (2002) In vitro reconstitution of the activated zeaxanthin state associated with energy dissipation in plants. Proc. Nat. Acad. Sci. (USA) 99: 16331-16335.
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Bacchi, CJ, LM Weiss, S Lane, B Frydman, A Valasinas, V Reddy, JS Sun, LJ Marton, IA Khan, M Moretto, N Yarlett, & M Wittner (2002), Novel synthetic polyamines are effective in the treatment of experimental microsporidiosis, an opportunistic AIDS-associated infection. Antimicrob. Agents Chemother. 46: 55-61. Microsporidia.
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Baroli, I, AD Do, T Yamane & KK Niyogi (2003), Absence of a functional xanthophyll cycle protects Chlamydomonas reinhardtii from photooxidative stress. Plant Cell 15: 992–1008.
Bartlett, GJ, N Borkakoti & JM Thornton (2003), Catalyzing new reactions during evolution: Economy of residues and mechanism. J. Mol. Biol. 331: 829-860. Eukarya.
Bendich, AJ & K Drlica (2000), Prokaryotic and eukaryotic chromosomes: what's the difference? Bioessays 22: 481-486. Eukarya.
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Bishop, RE C Cambillau, GG Privé, D Hsi, D Tillo & ERM Tillier (2005), Bacterial lipocalins: Origin, structure, and function, in Eurekah Biosciences Collection: Cell Metabolism. Eukarya.
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Bonanno, JB, C Edo, N Eswar, U Pieper, MJ Romanowski, V Ilyin, SE Gerchman, H Kycia, FW Studier, A Sali & SK Burley (2001), Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis. Proc. Nat. Acad. Sci. (USA) 98: 12896-12901. Eukarya.
Bonifacino, JS & BS Glick (2004), The mechanisms of vesicle budding and fusion. Cell 116: 153-166. Eukarya.
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Bresler, V & L Fishelson (2004), Polyploidy and polyteny in the gigantic eubacterium Epulopiscium fishelsoni. Marine Biol. 143: 17-21. (reviewed abstract only) Eukarya.
Brochier, C (2002), Phylogénie des Eubactéries et mise en évidence des transferts horizontaux. Unpubl. doctoral dissertation. Univ. Paris-Sud. Eukarya.
Brochier, C, P López-García & D Moreira (2004), Horizontal gene transfer and archaeal origin of deoxyhypusine synthase homologous genes in bacteria. Gene 330: 169-176. Eukarya.
Brocks, JJ, R Buick, RE Summons & GA Logan (2003), A reconstruction of Archean biological diversity based on molecular fossils from the 2.78 to 2.45 billion-year-old Mount Bruce Supergroup, Hamersley Basin, Western Australia. Geochim. Cosmochim. Acta 67: 4321-4335. Eukarya.
Brugerolle, G (1991), Flagellar and cytoskeletal systems in amitochondriate flagellates: Archamoeba, Metamonada and Parabasala. Protoplasma 164: 70–90. Oxymonadida, Polymastigidae, Pyrsonymphidae.
Brugerolle, G & H König (1997), Ultrastructure and organization of the cytoskeleton in Oxymonas, an intestinal flagellate of termites. J. Eukaryot. Microbiol. 44: 305-313. Oxymonadidae, Pyrsonymphidae, Streblomastigidae.
Buettner, R, G Papoutsoglou, E Scemes, DC Spray & R Dermietzel (2000), Evidence for secretory pathway localization of a voltage-dependent anion channel isoform. Proc. Nat. Acad. Sci. (USA) 97: 3201-3206. Eukarya.
Burgoyne, RD & A Morgan (2003), Secretory granule exocytosis. Physiol. Rev. 83: 581–632.
Butler, MK J Wang, RI Webb & JA Fuerst (2002), Molecular and ultrastructural confirmation of classification of ATCC 35122 as a strain of Pirellula staleyi. Int. J. Syst. Evol. Microbiol. 52: 1663-1667. Eukarya.
Cabello, P, MD Roldán & C Moreno-Vivián (2004), Nitrate reduction and the nitrogen cycle in Archaea. Microbiology 150: 3527-3546. Eukarya.
Cachon, J, M Cachon & KW Estep (1990), Phylum Actinopoda – Classes Polycystina (=Radiolaria) and Phaeodaria. in L Margulis, JO Corliss, M Melkonian & DJ Chapman [eds], Handbook of Protoctista: The Structure, Cultivation, Habitats and Life Histories of the Eukaryotic Microorganisms and their Descendants Exclusive of Animals, Plants and Fungi: A Guide to the Algae, Ciliates, Foraminifera, Sporozoa, Water Molds and the Other Protoctists. Jones & Bartlett Publ., pp. 334-346. Rhizaria.
Canning, EU, A Curry, & RM Overstreet (2002), Ultrastructure of Tuzetia weidneri sp. n. (Microsporidia: Tuzetiidae) in Skeletal Muscle of Litopenaeus setiferus and Farfantepenaeus aztecus (Crustacea: Decapoda) and New Data on Perezia nelsoni (Microsporidia: Pereziidae) in L. setiferus. Acta Protozool. 41:63-77. Microsporidia.
Cannon, GC, CE Bradburne, HC Aldrich, SH Baker, S Heinhorst, & JM Shively (2001), Microcompartments in prokaryotes: Carboxysomes and related polyhedra. Appl. Environ. Microbiol., 67: 5351–5361.
Carruthers, VB & LD Sibley (1999), Mobilization of intracellular calcium stimulates microneme discharge in Toxoplasma gondii. Mol. Microbiol. 31: 421–428.
Cavalier-Smith, T (1987), Eukaryotes with no mitochondria, Nature 326: 332–333.
Cavalier-Smith, T (1998), A revised six-kingdom system of life, Biol. Rev. Camb. Philos. Soc. 73: 203–266. Oxymonadida, Rhizaria.
Cavalier-Smith, T (1999), Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46: 347–366. Oxymonadida.
Cavalier-Smith, T (2002
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Cavalier-Smith, T (2003), Protist phylogeny and the high-level classification of Protozoa. Eur. J. Protistol. 39: 338-348. Rhizaria.
Cavalier-Smith, T (2004), Only six kingdoms of life. Proc. R. Soc. Lond B 271: 1251-1262. Eukarya.
Cavalier-Smith, T (2006), Rooting the tree of life by transition analyses. Biol. Direct 2006: 1: 19. Eukarya.
Cavalier-Smith, T & EE-Y Chao (1995), The opalozoan Apusomonas is related to the common ancestor of animals, fungi and choanoflagellates. Proc. Roy. Soc. Lond., B 261: 1-6. Apusomonadida.
Cavalier-Smith, T & EE-Y Chao (2003), Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution. J. Mol. Evol. 56: 540-63. Apusomonadida, Rhizaria.
Chillarón, J, R Roca, A Valencia, A Zorzano & M Palacín (2001), Heteromeric amino acid transporters: biochemistry, genetics, and physiology. Am. J. Physiol. Renal Physiol. 281: F995-F1018. Eukarya.
Chistoserdova, L, C Jenkins, MG Kalyuzhnaya, CJ Marx, A Lapidus, JA Vorholt, JT Staley, & ME Lidstrom (2004), The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Mol. Biol. Evol. 21: 1234-1241. Eukarya.
Cho, J-C, KL Vergin, RM Morris & SJ Giovannoni (2004), Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae. Env. Microbiol. 6: 611-621. Eukarya.
Cleveland, LR (1956), Brief account of the sexual cycles of the flagellates of Cryptocercus. J. Protozool. 3: 161–180. Oxymonadidae, Saccinobaculidae.
Clowes, CD (1985), Stoveracysta, a new gonyaulacacean dinoflagellate genus from the upper Eocene and lower Oligocene of New Zealand. Palynology 9: 27-36. Dinoflagellata
Couvreur B, R Wattiez, A Bollen, P Falmagne, D Le Ray & J-C Dujardin (2002), Eubacterial HslV and HslU subunits homologs in primordial eukaryotes. Mol. Biol. Evol. 19: 2110–2117. Eukarya.
Čuboňová, L, K Sandman, SJ Hallam, EF DeLong, & JN Reeve (2005), Histones in Crenarchaea. J. Bacteriol. 187: 5482–5485. Eukarya.
Dacks, JB & AJ Roger (1999), The first sexual lineage and the relevance of facultative sex. J. Mol. Evol. 48: 779-783. Oxymonadida.
Dacks, JB, JD Silberman, AGB Simpson, S Moriya, T Kudo, M Ohkuma, & R Redfield (2001), Oxymonads are closely related to the excavate taxon Trimastix. Mol. Biol. Evol. 18: 1034–1044. Oxymonadida, Pyrsonymphidae.
Daiyasu, H, T Hiroike, Y Koga & H Toh (2002), Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng. 15: 987-995. Eukarya.
Dale, B (1996), Dinoflagellate cyst ecology: modelling and geological applications, in J Jansonius & DC McGregor [eds.], Palynology: Principles and Applications. Am. Assoc. Stratigr. Palynol. Found., 3: 1249–1275. Dinoflagellata.
Daubin, V, M Gouy & G Perrière (2001), Bacterial molecular phylogeny using supertree approach. Genome Inf. 12: 155-164. Eukarya.
Delbac, F, I Peuvel, G Metenier, E Peyretaillade, & CP Vivares (2001), Microsporidian invasion apparatus: Identification of a novel polar tube protein and evidence for clustering of ptp1 and ptp2 genes in three Encephalitozoon species. Infect. Immun. 69: 1016–1024. Microsporidia.
Devos D, S Dokudovskaya, F Alber, R Williams, BT Chait, A Sali & MP Rout (2004), Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol. 2: e380. Eukarya.
Didier, ES (1998), Microsporidosis. Clin. Infect. Dis. 27: 1-8. Microsporidia.
Dienes, L & S Bullivant (1968), Morphology and reproductive processes of the L forms of bacteria II. Comparative study of L forms and Mycoplasma with the electron microscope. J. Bacteriol. 95: 672-687. Eukarya.
Du, Y, S Ferro-Novick & P Novick (2004), Dynamics and inheritance of the endoplasmic reticulum, J. Cell Sci. 117: 2871-2878. Eukarya.
Edgcomb, VP, AJ Roger, AGB Simpson, DT Kysela, & ML Sogin (2001), Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies. Mol. Biol. Evol. 18: 514–522. Microsporidia.
Erxleben, C & H Plattner (1994), Ca2+ release from subplasmalemmal stores as a primary event during exocytosis in Paramecium cells. J. Cell Biol. 127: 935-945.
Evitt, WR (1985), Sporopollenin Dinoflagellate Cysts -- Their Morphology and Interpretation. Amer. Assoc. Strat. Palynologists Found. 333 pp. Dinoflagellata.
Fast, NM & PJ Keeling (2001), Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: Mitochondrion-derived carbon metabolism in Microsporidia. Mol. & Biochem. Parasitol. 117: 201-209. Microsporidia.
Fast, NM, JM Logsdon, Jr., & WF Doolittle (1999), Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: Evidence for a Microsporidia–Fungi relationship and spliceosomal intron loss. Mol. Biol. Evol. 16: 1415-1419. Microsporidia.
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Fensome, RA, JB Riding & FJR Taylor (1996), Dinoflagellates in J Jansonius & DC McGregor [eds.], Palynology: Principles and Applications. Am. Assoc. Stratigr. Palynol. Found., 1: 107-169. Dinozoa.
Fieseler, L, M Horn, M Wagner & U Hentschel (2004), Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Appl. Environ. Microbiol. 70: 3724–3732 Eukarya.
Finlay, BJ, GF Esteban & T Fenchel (2004), Protist diversity is different? Protist 155: 15-22. Rhizaria.
Forterre, P (2006), Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain. Proc. Nat. Acad. Sci. (USA) 103: 3669-3674. Eukarya.
Froissard, M, R Kissmehl, J-C Dedieu, T Gulik-Krzywicki, H Plattner, & J Cohen (2002), N-ethylmaleimide-sensitive factor is required to organize functional exocytotic microdomains in Paramecium. Genetics 161: 643-650.
Fuerst, JA (1995), The Planctomycetes: emerging models for microbial ecology, evolution and cell biology. Microbiology 141: 1493-1506. Eukarya.
Fuerst, JA (2004), Planctomycetes – a phylum of emerging interest for microbial evolution and ecology. WFCC Newsltr. 38: 1-11. Eukarya.
Fuerst, JA (2005), Intracellular compartmentation in Planctomycetes. Ann. Rev. Microbiol. 59: 299-328. Eukarya.
Gade, D, D Theiss, H Lehrach, R Amann, J Gobom & R Rabus (2003), Reconstuction of carbohydrate catabolism in Rhodopirellula baltica by proteomics. Proteomic Forum ´03 (unpubl. abstr.) P-198. Eukarya.
Garrow, AG, A Agnew & DR Westhead (2005), TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Informatics 6: 56. Eukarya.
Gille, C, A Goede, C Schlöetelburg, R Preiβner, PM Kloetzel, UB Göbel & C Frömmel (2003), A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome. J. Mol. Biol. 326: 1437-1448. Eukarya.
Gitai, Z, N Dye & L Shapiro (2004), An actin-like gene can determine cell polarity in bacteria. Proc. Nat. Acad. Sci. (USA) 101: 8643–8648. Eukarya.
Glickman, MH & A Ciechanover (2002), The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction. Phyiol. Rev. 82: 373-428. Eukarya.
Glöckner, FO, M Kube, M Bauer, H Teeling, T Lombardot, W Ludwig, D Gade, A Beck, K Borzym, K Heitmann, R Rabus, H Schlesner, R Amann & R Reinhardt (2003), Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Nat. Acad. Sci. (USA) 100: 8298-8303. Eukarya.
Goll, RM & EG Merinfeld (1979), Radiolaria, in RW Fairbridge & D Jablonski [eds.], The Encyclopedia of Paleontology. Dowden, Hutchinson, & Ross, pp. 673-684. Acantharea.
Gooday, AJ (1991), Xenophyophores (Protista, Rhizopoda) in box-core samples from the abyssal northeast Atlantic Ocean (BIOTRANS area): Their taxonomy, morphology, and ecology. J. Foram. Res. 21: 197-212. Xenophyophorea.
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Hausmann, S, CP Vivarès & S Shuman (2002), Characterization of the mRNA capping apparatus of the microsporidian parasite Encephalitozoon cuniculi. J. Biol. Chem. 277: 96-103. Microsporidia.
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Hickey, AJ, E Conway de Macario & AJ Macario (2002), Transcription in the Archaea: basal factors, regulation, and stress-gene expression. Crit. Rev. Bioch. Mol. Biol. 37: 537-599. Eukarya.
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Iyer, R & AH Delcour (1997), Complex inhibition of OmpF and OmpC bacterial porins by polyamines. J. Biol. Chem. 272: 18595-18601. Eukarya.
Javaux, EJ, AH Knoll & MR Walter (2004), Eukaryotic diversity in mid-Proterozoic oceans: TEM evidence for eukaryotic diversity in mid-Proterozoic oceans. Geobiology 2: 121-132. Plantae.
Jelsbak, L, M Givskov & D Kaiser (2005), Enhancer-binding proteins with a forkhead-associated domain and the σ54 regulon in Myxococcus xanthus fruiting body development. Proc. Nat. Acad. Sci. (USA) 0409371102. Eukarya.
Jenkins, C, V Kedar & JA Fuerst (2002), Gene discovery within the planctomycete division of the domain Bacteria using sequence tags from genomic DNA libraries. Genome Biol. 3: research0031. Eukarya.
Jenkins, C, R Samudrala, I Anderson, BP Hedlund, G Petroni, N Michailova, N Pinel, R Overbeek, G Rosati, & JT Staley (2002), Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter. Proc. Nat. Acad. Sci. (USA) 99: 17049-17054. Eukarya.
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Karlin, S, L Brocchieri, A Campbell, M Cyert, & J Mrázek (2005), Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes. Proc. Nat. Acad. Sci. (USA) 102: 7309-7314. Eukarya.
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Keeling, PJ & NM Fast (2002), Microsporidia: Biology and evolution of highly reduced intracellular parasites. Ann. Rev. Microbiol. 56: 93–116. Microsporidia.
Keeling, PJ & BS Leander (2003), Characterization of a non-canonical genetic code in the oxymonad flagellate Streblomastix strix (Eukaryota, Oxymonadida). J. Mol. Biol. 326:1337-1349. Streblomastigidae.
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