Fungi References




Adams, DJ (2004), Fungal cell wall chitinases and glucanases. Microbiology 150: 2029-2035. Cell Wall.

Alkemar, G & O Nygård (2003), A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits. RNA 9:20–24.

An, K-D, H Nishida, Y Miura & A Yokota (2002), Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses. BMC Evol. Biol. 2: 6 Cell Wall.


Baker, BJ, MA Lutz, SC Damson, PL Bond & JF Banfield (2004), Metabolically active eukaryotic communities in extremely acidic mine drainage. Appl. Environ. Microbiol. 70: 6264-6271. Pezizomycotina.

Bhattacharya, D, F Lutzoni, V Reeb, D Simon, J Nason, & F Fernandez (2000), Widespread occurrence of spliceosomal introns in the rDNA genes of Ascomycetes. Mol. Biol. Evol. 17: 1971–1984. Pezizomycotina.

Bold, HC (1973), Morphology of Plants [3rd ed.]. Harper & Row, 668 pp.

Borneman, J & RJ Hartin (2000), PCR primers that amplify fungal rRNA genes from environmental samples. Appl. & Env. Microbiol. 66: 4356-4360.

Bullerwell, CE, J Leigh, L Forget & BF Lang 2003), A comparison of three fission yeast mitochondrial genomes, Nucl. Acids Res. 31: 759-768  Ascomycota.


Cabib, E, D-H Roh, M Schmidt, LB Crotti & A Varma (2001), The yeast cell wall and septum as paradigms of cell growth and morphogenesis. J. Biol. Chem. 276: 19679-19682. Cell Wall.

Cannone JJ, S Subramanian, MN Schnare, JR Collett, LM D'Souza, Y Du, B Feng, N Lin, LV Madabusi, KM Muller, N Pande, Z Shang, N Yu, & RR Gutell (2002), The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed Central Bioinformatics 3:15. Pezizomycotina.

Cooper, S & K Shedden (2003), Microarray analysis of gene expression during the cell cycle. Cell & Chromosome 2:1. Pezizomycotina.


Durán, A & C Nombela (2004), Fungal cell wall biogenesis: building a dynamic interface with the environment. Microbiology 150: 3099-3103. Cell Wall.


Ferreiro, JA, NG Powell, N Karabetsou, NA Kent, J Mellor & R Waters (2004), Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus. Nuc. Acids Res. 32: 1617-1626. Pezizomycotina.

Filley, TR, RA Blanchette, E Simpson & ML Fogel 2001), Nitrogen cycling by wood decomposing soft-rot fungi in the “King Midas tomb,” Gordion, Turkey. Proc. Nat. Acad. Sci. (USA) 98: 13346–13350. Ascomycota.


Gaillardin, C, G Duchateau-Nguyen, F Tekaia, B Llorente, S Casaregola, C Toffano-Nioche, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, J deMontigny, B Dujon, P Durrens, A Lépingle, A Malpertuy, C Neuvéglise, O Ozier-Kalogéropoulos, S Potier, W Saurin, M Termier, M Wésolowski-Louvel, P Wincker, J-L Souciet & J Weissenbach (2000),  Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes. FEBS Let. 487: 134-149  Ascomycota.

García, R, C Bermejo, C Grau, R Pérez, JM Rodríguez-Peña, J Francois, C Nombela & J Arroyo (2004), The global transcriptional response to transient cell wall damage in Saccharomyces cerevisiae and its regulation by the cell integrity signaling pathway. J. Biol. Chem. 279: 15183–15195. Cell Wall.

Gasch AP, AM Moses, DY Chiang, HB Fraser, M Berardini & MB Eisen (2004), Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol 2: e398. Pezizomycotina.

Grün, CH (2003), Structure and Biosynthesis of Fungal α-Glucans. Ph.D. dissertation, Univ. Utrcht. WWW. Cell Wall.

Guarro, J, J Gené & AM Stchigel (1999), Developments in fingal taxonomy. Clin. Microbiol. Rev. 12: 454-500.


Haugen, P & D Battacharya (2004), The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucleic Acids Res. 32: 2049-2057. Group I Introns.

Haugen, P, V Reeb, F Lutzoni & D Bhattacharya 2004a), The evolution of homing endonuclease genes and Group I introns in nuclear rDNA. Mol. Biol. Evol. 21: 129–140. Pezizomycotina.

Haugen, P, HJ Runge & D Bhattacharya (2004), Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns. RNA 10: 1084–1096. Pezizomycotina.

Hinnebusch, AG & K Natarajan (2002), Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress. Eukar. Cell 1: 22-32.    Pezizomycotina.




Johnson, TE (1978), Isolation and characterization of perithecial development mutants in Neurospora. Genetics 88: 27-47.


Kuras, L, R Barbey & D Thomas (1997), Assembly of a bZIP-bHLH transcription activation complex: formation of the yeast Cbf1-Met4-Met28 complex is regulated through Met28 stimulation of Cbf1 DNA binding. Pezizomycotina.


Lesage, G, A-M Sdicu, P Ménard, J Shapiro, S Hussein & H Bussey (2004), Analysis of β-1,3-glucan assembly in Saccharomyces cerevisiae using a synthetic interaction network and altered sensitivity to caspofungin. Genetics 167: 35-49. Cell Wall.

Liu, Y-JJ & BD Hall (2004), Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny. Proc. Nat. Acad. Sci. (USA) 101: 4507-4512. Ascomycota, Pezizomycotina.

Liu, Y-JJ, S Whelan & BD Hall (1999), Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerse II subunit. Mol. Biol. Evol. 16: 1799–1808.   Cell Wall.

Llorente, B, P Durrens, A Malpertuy, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, B Dujon, J deMontigny, A Lépingle, C Neuvéglise, O Ozier-Kalogeropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & C Gaillardin (2000), Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae. FEBS Let. 487: 122-133. Ascomycota.

Llorente, B, A Malpertuy, C Neuvéglise, J deMontigny, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, P Durrens, C Gaillardin, A Lépingle, O Ozier-Kalogéropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & B Dujon (2000), Genomic exploration of the hemiascomycetous yeasts: 18. Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae. FEBS Let. 487: 101-112. Ascomycota.

Lutzoni, F, F Kauff, CJ Cox, D Mclaughlin, G Celio, B Dentinger, M Padamsee, D Hibbett, TY James, E Baloch, M Grube, V Reeb, V Hofstetter, C Schoch, AE Arnold, J Miadlikowska, J Spatafora, D Johnson, S Hambleton, M Crockett, R Shoemaker, G-H Sung, R Lücking, T Lumbsch, K O'donnell, M Binder, P Diederich, D Ertz, C Gueidan, K Hansen, RC Harris, K Hosaka, Y-W Lim, B Matheny, H Nishida, D Pfister, J Rogers, A Rossman, I Schmitt, H Sipman, J Stone, J Sugiyama, R Yahr, & R Vilgalys (2004). Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits. Amer. J. Bot. 91: 1446-1480.    Pezizomycotina.

Lynch, M & A Kewalramani (2003), Messenger RNA surveillance and the evolutionary proliferation of introns. Mol. Biol. Evol. 20:563-571.


Machado, AK, BA Morgan & GF Merrill (1997), Thioredoxin reductase-dependent inhibition of MCB Cell Cycle Box activity in Saccharomyces cerevisiae. J. Biol. Chem. 272: 17045-17054. Pezizomycotina.

Madigan, MT, JM Martinko & J Parker (2003), Brock: Biology of Microorganisms, [10th ed.]. Prentice-Hall.  1019+ pp.

Malpertuy, A, F Tekaia, S Casarégola, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, J deMontigny, P Durrens, C Gaillardin, A Lépingle, B Llorente, C Neuvéglise, O Ozier-Kalogeropoulos, S Potier, W Saurin, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & B Dujon (2000), Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes-specific genes. FEBS Let. 487: 113-121. Ascomycota.

Muller, KM, JJ Cannone, RR Gutell, & RG Sheath 2001), A structural and phylogenetic analysis of the Group IC1 Introns in the Order Bangiales (Rhodophyta). Mol. Biol. Evol. 18: 1654–1667. Group I Introns.


Natarajan, K, MR Meyer, BM Jackson, D Slade, C Roberts, AG Hinnebusch & MJ Marton (2001), Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol. & Cell. Biol. 21: 4347-4368.    Pezizomycotina.


Pessoni, RAB, G Freshour, R deCássia, L Figueiredo-Ribeiro, MG Hahn & MR Braga (2002), Woronin bodies in Penicillium janczewskii Zaleski. Brazil. J. Microbiol. 33(2). WWW.

Pilpel, Y, P Sudarsanam & GM Church (2001), Identifying regulatory networks by combinatorial analysis of promoter elements. Nature Genetics 29: 1-7.   Pezizomycotina.

Pitarch, A, M Sánchez, C Nombela & C Gil 2002), Sequential fractionation and two-dimensional gel analysis unravels the complexity of the dimorphic fungus Candida albicans cell wall proteome. Molec. & Cell. Proteomics 1.12: 967-982. Cell Wall.


Redecker, D (2002), New views on fungal evolution based on DNA markers and the fossil record. Res. Microbiol. 153: 125-130. Pezizomycotina.

Redecker, D, R Kodner & LE Graham (2000), Glomalean fungi from the Ordovician. Science 289: 1920-1921. Pezizomycotina.

Reeb, V, F Lutzoni & C Roux (2004), Contribution of RPB2 to multilocus phylogenetic studies of the Euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol. Phylog. & Evol. 32: 1036-1060. Pezizomycotina.

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Vandenkoornhuyse, P SL Baldauf, C Leyval, J Straczek, & JPW Young (2002), Extensive fungal diversity in plant roots. Science 295: 2051


Wu, J-G & BL Miller (1997), Aspergillus asexual reproduction and sexual reproduction are differentially affected by transcriptional and translational mechanisms regulating stunted gene expression. Mol. Cell. Biol. 17: 6191–6201. Ascomycota.

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