Palaeos		Ascomycota
Fungi		References

Ascomycota References

Baker, BJ, MA Lutz, SC Damson, PL Bond & JF Banfield (2004), Metabolically active eukaryotic communities in extremely acidic mine drainage.  Appl. Environ. Microbiol. 70: 6264-6271.  Pezizomycotina.  

Bhattacharya, D, F Lutzoni, V Reeb, D Simon, J Nason, & F Fernandez (2000), Widespread occurrence of spliceosomal introns in the rDNA genes of Ascomycetes.  Mol. Biol. Evol. 17: 1971–1984.  Pezizomycotina.   

Bold, HC (1973), Morphology of Plants [3rd ed.].  Harper & Row, 668 pp.  Ascomycota.

Bullerwell, CE, J Leigh, L Forget & BF Lang (2003), A comparison of three fission yeast mitochondrial genomes, Nucl. Acids Res. 31: 759-768  Ascomycota.

Cannone JJ, S Subramanian, MN Schnare, JR Collett, LM D'Souza, Y Du, B Feng, N Lin, LV Madabusi, KM Muller, N Pande, Z Shang, N Yu, & RR Gutell (2002), The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.  BioMed Central Bioinformatics 3:15.  Pezizomycotina.  

Cooper, S & K Shedden (2003), Microarray analysis of gene expression during the cell cycle.  Cell & Chromosome 2:1.  Pezizomycotina.  

Ferreiro, JA, NG Powell, N Karabetsou, NA Kent, J Mellor & R Waters (2004), Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus.  Nuc. Acids Res. 32: 1617-1626.  Pezizomycotina.   

Filley, TR, RA Blanchette, E Simpson & ML Fogel (2001), Nitrogen cycling by wood decomposing soft-rot fungi in the “King Midas tomb,” Gordion, Turkey.  Proc. Nat. Acad. Sci. (USA) 98: 13346–13350.  Ascomycota.

Gaillardin, C, G Duchateau-Nguyen, F Tekaia, B Llorente, S Casaregola, C Toffano-Nioche, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, J deMontigny, B Dujon, P Durrens, A Lépingle, A Malpertuy, C Neuvéglise, O Ozier-Kalogéropoulos, S Potier, W Saurin, M Termier, M Wésolowski-Louvel, P Wincker, J-L Souciet & J Weissenbach (2000),  Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes.  FEBS Let. 487: 134-149  Ascomycota.  

Gasch AP, AM Moses, DY Chiang, HB Fraser, M Berardini & MB Eisen (2004), Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol 2: e398.  Pezizomycotina.  

Haugen, P, V Reeb, F Lutzoni & D Bhattacharya (2004a), The evolution of homing endonuclease genes and Group I introns in nuclear rDNA.  Mol. Biol. Evol. 21: 129–140.  Pezizomycotina.

Haugen, P, HJ Runge & D Bhattacharya (2004), Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns.  RNA 10: 1084–1096.  Pezizomycotina.  

Hinnebusch, AG & K Natarajan (2002), Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress.  Eukar. Cell 1: 22-32.    Pezizomycotina.  

Kuras, L, R Barbey & D Thomas (1997), Assembly of a bZIP-bHLH transcription activation complex: formation of the yeast Cbf1-Met4-Met28 complex is regulated through Met28 stimulation of Cbf1 DNA binding.  Pezizomycotina.  

Liu, Y-JJ & BD Hall (2004), Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny.   Proc. Nat. Acad. Sci. (USA) 101: 4507-4512. Ascomycota, Pezizomycotina. 

Llorente, B, P Durrens, A Malpertuy, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, B Dujon, J deMontigny, A Lépingle, C Neuvéglise, O Ozier-Kalogeropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & C Gaillardin (2000), Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae.  FEBS Let. 487: 122-133.  Ascomycota.

Llorente, B, A Malpertuy, C Neuvéglise, J deMontigny, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, P Durrens, C Gaillardin, A Lépingle, O Ozier-Kalogéropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & B Dujon (2000), Genomic exploration of the hemiascomycetous yeasts: 18. Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae.  FEBS Let. 487: 101-112.  Ascomycota.  

Lutzoni, F, F Kauff, CJ Cox, D Mclaughlin, G Celio, B Dentinger, M Padamsee, D Hibbett, TY James, E Baloch, M Grube, V Reeb, V Hofstetter, C Schoch, AE Arnold, J Miadlikowska, J Spatafora, D Johnson, S Hambleton, M Crockett, R Shoemaker, G-H Sung, R Lücking, T Lumbsch, K O'donnell, M Binder, P Diederich, D Ertz, C Gueidan, K Hansen, RC Harris, K Hosaka, Y-W Lim, B Matheny, H Nishida, D Pfister, J Rogers, A Rossman, I Schmitt, H Sipman, J Stone, J Sugiyama, R Yahr, & R Vilgalys (2004).  Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits.  Amer. J. Bot. 91: 1446-1480.    Pezizomycotina. 

Machado, AK, BA Morgan & GF Merrill (1997), Thioredoxin reductase-dependent inhibition of MCB Cell Cycle Box activity in Saccharomyces cerevisiae.  J. Biol. Chem. 272: 17045-17054.  Pezizomycotina. 

Malpertuy, A, F Tekaia, S Casarégola, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, J deMontigny, P Durrens, C Gaillardin, A Lépingle, B Llorente, C Neuvéglise, O Ozier-Kalogeropoulos, S Potier, W Saurin, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J-L Souciet & B Dujon (2000), Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes-specific genes.  FEBS Let. 487: 113-121.  Ascomycota.  

Natarajan, K, MR Meyer, BM Jackson, D Slade, C Roberts, AG Hinnebusch & MJ Marton (2001), Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast.  Mol. & Cell. Biol. 21: 4347-4368.    Pezizomycotina.   

Pilpel, Y, P Sudarsanam & GM Church (2001), Identifying regulatory networks by combinatorial analysis of promoter elements.  Nature Genetics 29: 1-7.  Pezizomycotina.  

Redecker, D (2002), New views on fungal evolution based on DNA markers and the fossil record.  Res. Microbiol. 153: 125-130.  Pezizomycotina. 

Redecker, D, R Kodner & LE Graham (2000), Glomalean fungi from the Ordovician.  Science 289: 1920-1921.  Pezizomycotina. 

Reeb, V, F Lutzoni & C Roux (2004), Contribution of RPB2 to multilocus phylogenetic studies of the Euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory.  Mol. Phylog. & Evol. 32: 1036-1060.  Pezizomycotina.   

Remy, W, TN Taylor, H Hass & H Kerp (1994), Four hundred-million-year-old vesicular arbuscular mycorrhizae.  Proc. Nat. Acad. Sci. (USA) 91: 11841-11843.  Pezizomycotina. 

Rooney, AP & TJ Ward (2005), Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm.  Proc. Nat. Acad. Sci. (USA) 102: 5084-5089.  Pezizomycotina.  

Schadt, CW, AP Martin, DA Lipson & SK Schmidt (2003), Seasonal dynamics of previously unknown fungal lineages in tundra soils.  Science 301: 1359-1361. Pezizomycotina. 

Wu, J-G & BL Miller (1997), Aspergillus asexual reproduction and sexual reproduction are differentially affected by transcriptional and translational mechanisms regulating stunted gene expression.  Mol. Cell. Biol. 17: 6191–6201.  Ascomycota.

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